diff --git a/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv b/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv index 5489c25e..76e9619e 100644 --- a/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv +++ b/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv @@ -17,3 +17,4 @@ STAA8,Staphylococcus aureus,UAMS-1,54,ensembl_bacteria,coming soon,coming soon,, ,Streptococcus mutans,UA159,54,ensembl_bacteria,coming soon,coming soon,,,, BRADI,Brachypodium distachyon,,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/brachypodium_distachyon/dna/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/brachypodium_distachyon/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.54.gtf.gz,15368,,, ORYSJ,Oryza sativa,Japonica,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/oryza_sativa/dna/Oryza_sativa.IRGSP-1.0.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/oryza_sativa/Oryza_sativa.IRGSP-1.0.54.gtf.gz,4530,BSgenome.Osativa.MSU.MSU7,, +EUGLENA,Euglena gracilis,,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/euglena_gracilis/dna/Euglena_gracilis.GCA_900492545.1.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/euglena_gracilis/Euglena_gracilis.GCA_900492545.1.54.gtf.gz,3039,,, diff --git a/RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/config/default.config b/RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/config/default.config index 12fea065..0954f4c3 100644 --- a/RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/config/default.config +++ b/RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/config/default.config @@ -50,5 +50,5 @@ params { // For now, this particular is good for all organisms listed on the file. - reference_table = "https://raw.githubusercontent.com/nasa/GeneLab_Data_Processing/1cda098ba95c4fdd58984139d3d69085d1c12797/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv" + reference_table = "${projectDir}/my_annotations.csv" }