From 3ada7e872cc2ad93a70bf39c4d35b2ed6abeaca4 Mon Sep 17 00:00:00 2001 From: Anant Mittal Date: Thu, 7 Aug 2025 14:09:55 -0700 Subject: [PATCH 1/2] refactor: archive caltech participatory design workshop protocol --- .../.gitattributes | 0 .../.gitignore | 0 .../README.md | 0 .../pixi.lock | 0 .../pixi.toml | 0 .../session-outline/index.md | 0 .../Caltech-Session1-Presentation.pdf | Bin .../session1/index.md | 0 .../session2/index.md | 0 .../session3/index.md | 0 .../session4/index.md | 0 .../session5/index.md | 0 .../session6/index.md | 2 +- .../timers/timer-10-minutes.md | 0 .../timers/timer-15-minutes.md | 0 .../timers/timer-20-minutes.md | 0 .../timers/timer-25-minutes.md | 0 .../timers/timer-5-minutes.md | 0 .../workshop-preparation/index.md | 0 _config.yml | 5 ++--- _toc.yml | 20 +++++++++--------- 21 files changed, 13 insertions(+), 14 deletions(-) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/.gitattributes (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/.gitignore (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/README.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/pixi.lock (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/pixi.toml (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session-outline/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session1/Caltech-Session1-Presentation.pdf (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session1/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session2/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session3/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session4/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session5/index.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/session6/index.md (81%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/timers/timer-10-minutes.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/timers/timer-15-minutes.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/timers/timer-20-minutes.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/timers/timer-25-minutes.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/timers/timer-5-minutes.md (100%) rename {AI_For_Scientific_Discovery_Participatory_Design_Workshop => Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop}/workshop-preparation/index.md (100%) diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitattributes b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitattributes similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitattributes rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitattributes diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitignore b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitignore similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitignore rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/.gitignore diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.lock b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.lock similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.lock rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.lock diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.toml b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.toml similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.toml rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/pixi.toml diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md similarity index 81% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md index 767558d..91c623a 100644 --- a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md +++ b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md @@ -14,5 +14,5 @@ - Share how these ideas could be developed further. - Please take this time to fill out the following brief survey to tell us a little about your experience in this workshop and any future interests: - - Participant Form QRCODE + - Participant Form QRCODE ``` diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-10-minutes.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-10-minutes.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-10-minutes.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-10-minutes.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-15-minutes.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-15-minutes.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-15-minutes.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-15-minutes.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-20-minutes.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-20-minutes.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-20-minutes.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-20-minutes.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-25-minutes.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-25-minutes.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-25-minutes.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-25-minutes.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-5-minutes.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-5-minutes.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-5-minutes.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/timers/timer-5-minutes.md diff --git a/AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md b/Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md similarity index 100% rename from AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md rename to Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md diff --git a/_config.yml b/_config.yml index 8bc23df..b95e920 100644 --- a/_config.yml +++ b/_config.yml @@ -71,12 +71,11 @@ sphinx: # application/vnd.holoviews_load.v0+json, application/vnd.holoviews_exec.v0+json suppress_warnings: ["mystnb.unknown_mime_type", "misc.highlighting_failure"] notfound_context: - body: - "

Whoops! 404 Page Not Found

\n\n

Sorry, this page doesn't + body: "

Whoops! 404 Page Not Found

\n\n

Sorry, this page doesn't exist. Many sections of this book have been updated recently.

Try the search box 🔎 to find what you're looking for!

" notfound_urls_prefix: / html_extra_path: - - "AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf" + - "Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/Caltech-Session1-Presentation.pdf" bibtex_reference_style: author_year # or label, super, \supercite diff --git a/_toc.yml b/_toc.yml index 88acbc4..e03ab2e 100644 --- a/_toc.yml +++ b/_toc.yml @@ -4,16 +4,6 @@ format: jb-book parts: - caption: Workshops chapters: - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md - sections: - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md - - file: AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md - file: AI_Postdoc_Workshop/README.md sections: - file: AI_Postdoc_Workshop/module1/index.md @@ -33,6 +23,16 @@ parts: - file: demos/olmo-rag/index.ipynb - caption: Archive chapters: + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/README.md + sections: + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/workshop-preparation/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session-outline/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session1/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session2/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session3/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session4/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session5/index.md + - file: Archive/AI_For_Scientific_Discovery_Participatory_Design_Workshop/session6/index.md - file: Archive/SciPy2024/README.md sections: - file: Archive/SciPy2024/module1/index.md From b32815f2e12798e3dcde29b3b98ed50404d8daf6 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 7 Aug 2025 21:11:27 +0000 Subject: [PATCH 2/2] style: pre-commit fixes --- _config.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/_config.yml b/_config.yml index b95e920..ffe571b 100644 --- a/_config.yml +++ b/_config.yml @@ -71,7 +71,8 @@ sphinx: # application/vnd.holoviews_load.v0+json, application/vnd.holoviews_exec.v0+json suppress_warnings: ["mystnb.unknown_mime_type", "misc.highlighting_failure"] notfound_context: - body: "

Whoops! 404 Page Not Found

\n\n

Sorry, this page doesn't + body: + "

Whoops! 404 Page Not Found

\n\n

Sorry, this page doesn't exist. Many sections of this book have been updated recently.

Try the search box 🔎 to find what you're looking for!

" notfound_urls_prefix: /