Skip to content
@BaranziniLab

Baranzini Lab UCSF

The Baranzini lab at UCSF explores the genetic and molecular mechanisms underlying complex diseases.

Popular repositories Loading

  1. KG_RAG KG_RAG Public

    Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

    Jupyter Notebook 930 108

  2. spoke_genelab spoke_genelab Public

    Jupyter Notebook 7 5

  3. graphRAIN graphRAIN Public

    Python 5

  4. versa_kg_rag_documentation versa_kg_rag_documentation Public

    Jupyter Notebook 4

  5. PSEV PSEV Public

    Python 3 1

  6. SPOKEsigs SPOKEsigs Public

    Jupyter Notebook 2 1

Repositories

Showing 10 of 37 repositories
  • mcp-proto-okn Public Forked from sbl-sdsc/mcp-proto-okn

    A Model Context Protocol (MCP) server that provides tools for querying SPARQL endpoints, with specialized support for NSF-funded Proto-OKN (Prototype Open Knowledge Network) knowledge graphs hosted on the FRINK platform.

    BaranziniLab/mcp-proto-okn’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Jan 6, 2026
  • MSConsole Public

    An AI-powered console for accessing UCSF MSBase database

    BaranziniLab/MSConsole’s past year of commit activity
    Python 0 0 0 0 Updated Jan 5, 2026
  • MedCP Public

    An MCP server that integrates electronic health record databases and a large-scale heterogeneous knowledge graph for rapid clinical record query and fast biomedical knowledge inference

    BaranziniLab/MedCP’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Dec 21, 2025
  • spoke_genelab Public
    BaranziniLab/spoke_genelab’s past year of commit activity
    Jupyter Notebook 7 BSD-3-Clause 5 0 0 Updated Dec 2, 2025
  • ssdr Public

    Statistical Software Development in R (SSDR)

    BaranziniLab/ssdr’s past year of commit activity
    Batchfile 0 MIT 0 0 0 Updated Nov 10, 2025
  • iMSMS_study Public
    BaranziniLab/iMSMS_study’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 24, 2025
  • fMedCP Public

    Functional interface with MedCP, using the Claude API key and the MedCP MCP tools

    BaranziniLab/fMedCP’s past year of commit activity
    Python 0 0 0 0 Updated Oct 3, 2025
  • ML3DgenomeHeight Public

    Machine learning reveals 3D regulatory mechanisms for height-associated haplotypes

    BaranziniLab/ML3DgenomeHeight’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Sep 10, 2025
  • MS_note_concept_ML Public

    This repository contains code for predicting Multiple Sclerosis (MS) diagnosis using clinical concepts extracted from electronic health records (EHR) notes and SPOKE knowledge graph embeddings.

    BaranziniLab/MS_note_concept_ML’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 27, 2025
  • translator_summarization Public
    BaranziniLab/translator_summarization’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 16, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…