Skip to content
@BrkRaw

brkraw

Preclinical MRI dataset toolkit
brkraw logo

The BrkRaw organization maintains and distributes BrkRaw, which converts raw data from Bruker Biospin preclinical MRI scanners into standardized, neuroimaging-ready datasets. At the same time, we enable extension development and distribution without touching the core codebase through YAML-based rules/specs and Python plugin entrypoints. Our goal is to make metadata parsing, data conversion, and reconstruction extensible so the data can be used seamlessly across downstream workflows.

What we provide

  • Tutorials and quick-start guides
  • Test datasets
  • Specs/rules/mappings for automating standardized data structures (e.g., BIDS)
  • Custom reconstruction examples and plugin showcases
  • A shared space for community contributions

Community

We welcome contributors to share rules, specs, plugins, conversion pipelines, and reconstruction examples built with BrkRaw.

Pinned Loading

  1. brkraw brkraw Public

    A modular toolkit for preclinical MRI: from raw studies to reproducible outputs.

    Python 50 30

  2. brkraw-tutorial brkraw-tutorial Public

    Repository of the BrkRaw Python API tutorials with the Jupyter Notebook

    Jupyter Notebook 1

  3. brkraw-mrs brkraw-mrs Public

    BrkRaw converter hook for Bruker raw data to NIfTI-MRS (ported from spec2nii)

    Python

  4. brkraw-viewer brkraw-viewer Public

    Legacy GUI plugin for brkraw 0.5.x. Upgrade in progress.

    Python

Repositories

Showing 10 of 12 repositories
  • brkraw-viewer Public

    Legacy GUI plugin for brkraw 0.5.x. Upgrade in progress.

    BrkRaw/brkraw-viewer’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • brkraw Public

    A modular toolkit for preclinical MRI: from raw studies to reproducible outputs.

    BrkRaw/brkraw’s past year of commit activity
    Python 50 GPL-3.0 30 18 (1 issue needs help) 0 Updated Jan 8, 2026
  • brkraw-backup Public

    Backup/archive CLI plugin for brkraw. (for MRI console)

    BrkRaw/brkraw-backup’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • brkraw-hook Public template
    BrkRaw/brkraw-hook’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • brkraw.github.io Public

    The BrkRaw github page for documentation

    BrkRaw/brkraw.github.io’s past year of commit activity
    HTML 1 2 0 0 Updated Jan 8, 2026
  • brkraw-bids Public
    BrkRaw/brkraw-bids’s past year of commit activity
    0 0 0 0 Updated Jan 8, 2026
  • brkraw-cli Public template

    brkraw CLI extension template

    BrkRaw/brkraw-cli’s past year of commit activity
    Python 0 2 0 0 Updated Jan 7, 2026
  • brkraw-mrs Public

    BrkRaw converter hook for Bruker raw data to NIfTI-MRS (ported from spec2nii)

    BrkRaw/brkraw-mrs’s past year of commit activity
    Python 0 0 0 0 Updated Jan 7, 2026
  • brkraw-tutorial Public

    Repository of the BrkRaw Python API tutorials with the Jupyter Notebook

    BrkRaw/brkraw-tutorial’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 6, 2026
  • brkraw-dataset Public

    Repository of the sample datasets from Bruker MRI scanner. (PvDatasets)

    BrkRaw/brkraw-dataset’s past year of commit activity
    0 1 0 0 Updated Jan 6, 2026

Top languages

Loading…

Most used topics

Loading…