Categorical Score Calibrations#589

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bencap wants to merge 23 commits intorelease-2025.6.0from

feature/bencap/538/categorical-calibrations

Commits on Dec 18, 2025

feat: centralized model rebuilding for more maintainable Pydantic circular dependencies
bencap
committed
feat: rebuilt Pydantic models up front for availability within entire module
bencap
committed
feat: add flexible model loader for Pydantic models from JSON body or multipart form data
bencap
committed
feat: Introduce Score Calibration Functional Classification
bencap
committed
feat: remove deprecated functional_ranges_deprecated_json column from ScoreCalibration model
bencap
committed
feat: add variants_for_functional_classification function to filter variants by score range
bencap
committed
feat: add support for class based score ranges
bencap
committed
feat: update standardize_dataframe to accept custom standard columns and adjust related tests
bencap
committed
fix: update inclusive bound checks to allow None values in FunctionalClassificationBase
bencap
committed
refactor: remove default values for inclusive bounds in ScoreCalibrationFunctionalClassification
bencap
committed
feat: add validation and standardization for calibration classes dataframe
bencap
committed
feat: allow creation and modification of class based calibrations
bencap
committed
refactor: replace ValueError with ValidationError for calibration class validation
bencap
committed
feat: add error handling for validation of class files in score calibration creation and modification
bencap
committed
feat: add file presence/absence checks in calibration creation and modification routes
bencap
committed
feat: allow class-based calibration definitions from hgvs_nt and hgvs_pro
bencap
committed
fixup
bencap
committed
feat: don't allow class-based calibrations during score set creatoin
bencap
committed
fix: only check resource existence for index columns
bencap
committed
fix: improperly renamed functional_ranges property in alembic downgrade
bencap
committed
fix: correct index column reference in validation function
bencap
committed
refactor: update calibrated variant effects script for new classification format
bencap
committed

Commits on Dec 30, 2025

fix: use functional classification enum in place of old style strings
bencap
committed

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Categorical Score Calibrations#589

Categorical Score Calibrations#589
bencap wants to merge 23 commits intorelease-2025.6.0from
feature/bencap/538/categorical-calibrations

Commits on Dec 18, 2025

feat: centralized model rebuilding for more maintainable Pydantic circular dependencies

feat: rebuilt Pydantic models up front for availability within entire module

feat: add flexible model loader for Pydantic models from JSON body or multipart form data

feat: Introduce Score Calibration Functional Classification

feat: remove deprecated functional_ranges_deprecated_json column from ScoreCalibration model

feat: add variants_for_functional_classification function to filter variants by score range

feat: add support for class based score ranges

feat: update standardize_dataframe to accept custom standard columns and adjust related tests

fix: update inclusive bound checks to allow None values in FunctionalClassificationBase

refactor: remove default values for inclusive bounds in ScoreCalibrationFunctionalClassification

feat: add validation and standardization for calibration classes dataframe

feat: allow creation and modification of class based calibrations

refactor: replace ValueError with ValidationError for calibration class validation

feat: add error handling for validation of class files in score calibration creation and modification

feat: add file presence/absence checks in calibration creation and modification routes

feat: allow class-based calibration definitions from hgvs_nt and hgvs_pro

fixup

feat: don't allow class-based calibrations during score set creatoin

fix: only check resource existence for index columns

fix: improperly renamed functional_ranges property in alembic downgrade

fix: correct index column reference in validation function

refactor: update calibrated variant effects script for new classification format

Commits on Dec 30, 2025

fix: use functional classification enum in place of old style strings

Categorical Score Calibrations#589bencap wants to merge 23 commits intorelease-2025.6.0VariantEffect/mavedb-api:release-2025.6.0from feature/bencap/538/categorical-calibrationsVariantEffect/mavedb-api:feature/bencap/538/categorical-calibrationsCopy head branch name to clipboard

Commits

Commits on Dec 18, 2025

Commits on Dec 30, 2025

Categorical Score Calibrations#589
bencap wants to merge 23 commits intorelease-2025.6.0from
feature/bencap/538/categorical-calibrations