Branch 1.3

affiliation_otu/affiliation_otu_0.10.0/Dockerfile

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+############################################################
+# Dockerfile to build container images
+# Based on debian
+# Tool on FROGS applications 
+# https://github.com/geraldinepascal/FROGS
+############################################################
+
+
+# Set the base image to Ubuntu
+FROM debian:wheezy
+
+# File Author / Maintainer
+MAINTAINER Sandrine Perrin <sandrine.perrin@france-bioinformatique.fr>
+
+# Set environment variable
+ENV TOOL_NAME RDPTools
+ENV TOOL_ID rdptools
+ENV TOOL_VERSION 2.0.2
+
+ENV PACKAGES \
+        ant \
+        git \
+        make \
+        ncbi-blast+=2.2.26-3 \
+        python \
+        openjdk-7-jdk \
+        openjdk-7-jre-headless
+
+ENV JAVA_HOME /usr/lib/jvm/java-7-openjdk-amd64
+
+# Update the repository sources list
+RUN apt-get update && \
+    apt-get install --yes $PACKAGES && \
+    apt-get clean
+
+# Download internal dependencies
+WORKDIR /tmp
+RUN git clone https://github.com/rdpstaff/RDPTools.git && \
+    cd ${TOOL_NAME}* && \
+    git checkout $TOOL_VERSION && \
+    git submodule update --init && \
+    make  && \
+    cp *.jar /usr/local/bin/
+
+
+# Copy dependencies for RDPTools
+RUN cp -r ${TOOL_NAME}*/lib /usr/local/bin/ && \
+    rm -r /tmp/${TOOL_NAME}*
+
+# Install AffiliationOTU 
+COPY bin/* /usr/local/bin/
+COPY affiliation_* /usr/local/bin/
+
+# Make script executable
+RUN chmod +x /usr/local/bin/*
+
+WORKDIR /
+
+# Set entrypoint
+

affiliation_otu/affiliation_otu_0.10.0/README.md

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+### Affiliation tools frogs description ###
+
+Taxonomic affiliation of each OTU's seed by RDPtools and BLAST
+
+### Build the image ###
+
+`docker build -t affiliation_otu:0.10.0 .`
+
+### Command example execution ###
+
+`docker run -it --rm -v <path_data>:/root -w /root affiliation_otu:0.10.0 affiliation_OTU.py -h`
+