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feat: Add Euglena gracilis support to reference system #187

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feat: Add Euglena gracilis support to reference system #187

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1 change: 1 addition & 0 deletions ...ence_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv
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Expand Up @@ -17,3 +17,4 @@ STAA8,Staphylococcus aureus,UAMS-1,54,ensembl_bacteria,coming soon,coming soon,,
,Streptococcus mutans,UA159,54,ensembl_bacteria,coming soon,coming soon,,,,
BRADI,Brachypodium distachyon,,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/brachypodium_distachyon/dna/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/brachypodium_distachyon/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.54.gtf.gz,15368,,,
ORYSJ,Oryza sativa,Japonica,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/oryza_sativa/dna/Oryza_sativa.IRGSP-1.0.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/oryza_sativa/Oryza_sativa.IRGSP-1.0.54.gtf.gz,4530,BSgenome.Osativa.MSU.MSU7,,
EUGLENA,Euglena gracilis,,54,ensembl_plants,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/fasta/euglena_gracilis/dna/Euglena_gracilis.GCA_900492545.1.dna.toplevel.fa.gz,https://ftp.ensemblgenomes.ebi.ac.uk/pub/plants/release-54/gtf/euglena_gracilis/Euglena_gracilis.GCA_900492545.1.54.gtf.gz,3039,,,
2 changes: 1 addition & 1 deletion RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/config/default.config
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Expand Up @@ -50,5 +50,5 @@ params {

// For now, this particular is good for all organisms listed on the file.

reference_table = "https://raw.githubusercontent.com/nasa/GeneLab_Data_Processing/1cda098ba95c4fdd58984139d3d69085d1c12797/GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110/GL-DPPD-7110_annotations.csv"
reference_table = "${projectDir}/my_annotations.csv"
}