Skip to content

Pull requests: nf-core/modules

New pull request New
166 Open 6,937 Closed
166 Open 6,937 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Swap picard/collecthsmetrics to topic
#9614 opened Dec 31, 2025 by SPPearce Loading…
17 tasks
Update samtools/index to version topic
#9613 opened Dec 31, 2025 by SPPearce Loading…
Swap mosdepth to topic
#9612 opened Dec 31, 2025 by SPPearce Loading…
Allow bcftools sort to use all allocated memory
#9611 opened Dec 30, 2025 by fellen31 Loading…
17 tasks
1
traitar module is drafted
#9605 opened Dec 22, 2025 by brovolia Loading…
1
@brovolia
4
Small bug fix for bff
#9600 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
Update vireo
#9599 opened Dec 22, 2025 by LuisHeinzlmeier Loading…
1
WIP: new module: MultiQC_SAV
#9587 opened Dec 18, 2025 by matthdsm Loading…
17 tasks
4
Add rgi/bwt
#9585 opened Dec 18, 2025 by vinisalazar Loading…
9
Capture nextclade tag version
#9584 opened Dec 18, 2025 by ammaraziz Loading…
5 tasks done
1
Fix fastANI module
#9583 opened Dec 17, 2025 by Ethan-Hetrick Loading…
10 of 17 tasks
16
Module to download CDD databases
#9582 opened Dec 17, 2025 by Ales-ibt Loading…
10 tasks done
@Ales-ibt
9
RiboCode - add error handling where the cli tool does not
#9581 opened Dec 17, 2025 by JackCurragh Loading…
9 of 17 tasks
1
rpsblast module and test
#9577 opened Dec 16, 2025 by Ales-ibt Loading…
7 tasks
@Ales-ibt
43
BiG Slice modules for nf-core
#9564 opened Dec 12, 2025 by SkyLexS Loading…
11 of 17 tasks
@SkyLexS
Fix for issue #5021 verifybamid2 module
#9563 opened Dec 12, 2025 by mmYeung Loading…
1
Add module t1k/run new module Adding a new module
#9555 opened Dec 11, 2025 by georgiakes Loading…
11 of 16 tasks
9
Update BWA_INDEX memory formula to match BWAMEM2_INDEX pattern
#9528 opened Dec 8, 2025 by Copilot AI • Draft
11 of 17 tasks
1
@edmundmiller
Add draft of FASTQ_REMOVE_ADAPTERS_AND_MERGE subworkflow with tests
#9521 opened Dec 8, 2025 by kornkv Loading…
41
bump vcf2maf to ensembl-vep=113.4 and update containers
#9515 opened Dec 6, 2025 by JustinBellavance Loading…
17 tasks
2
Assemblyscan 1.0.0
#9506 opened Dec 4, 2025 by eit-maxlcummins Loading…
10 tasks done
2
Get conda envs
#9504 opened Dec 4, 2025 by mirpedrol Loading…
update bclconvert with topic
#9494 opened Dec 2, 2025 by matthdsm Loading…
17 tasks
1
fix issue 9424: MultiQC report handling for AWS batch with S3 workDir
#9455 opened Nov 25, 2025 by SZhengP Loading…
3 of 17 tasks
1
fix: kmer env output missing when scientific notation found
#9442 opened Nov 24, 2025 by CormacKinsella Loading…
17 tasks
1
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.