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69 changes: 43 additions & 26 deletions Services/dataset.service.js
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,10 @@ const mysql = require('../Components/mysql');
const queryGenerator = require('./queryGenerator');
const cacheKeyGenerator = require('./cacheKeyGenerator');
const utils = require('../Utils');
const { DATASET_RETURN_FIELDS } = require('../Utils/datasetFields.js');
const {
DATASET_RETURN_FIELDS,
DATASET_SEARCH_RETURN_MAPPING
} = require('../Utils/datasetFields.js');
const FACET_FILTERS = [
'dataset_source_repo',
'primary_disease',
Expand Down Expand Up @@ -39,7 +42,7 @@ const search = async (searchText, filters, options) => {
searchableText = utils.getSearchableText(sanitizedSearchText);
}

query = queryGenerator.getSearchQueryV2(searchableText, filters, options, DATASET_RETURN_FIELDS);
query = queryGenerator.getSearchQueryV2(searchableText, filters, options, Object.keys(DATASET_SEARCH_RETURN_MAPPING));

if (query == null) {
return result;
Expand Down Expand Up @@ -71,32 +74,46 @@ const search = async (searchText, filters, options) => {
}

let datasets = searchResults.hits.hits.map((ds) => {
if (ds.inner_hits) {
const terms = Object.keys(ds.inner_hits);
const additionalHitsDict = {};
if (terms.length > 0) {
terms.forEach((t) => {
ds.inner_hits[t].hits.hits.forEach((hit) => {
if (!additionalHitsDict[hit._nested.offset]) {
additionalHitsDict[hit._nested.offset] = {};
additionalHitsDict[hit._nested.offset].source = hit._source;
additionalHitsDict[hit._nested.offset].highlight = [];
}
additionalHitsDict[hit._nested.offset].highlight = additionalHitsDict[hit._nested.offset].highlight.concat(hit.highlight['additional.attr_set.k']);
});
// const content = ds._source;
// const highlight = ds.highlight;

// Rename return fields and highlights according to mappings
const content = Object.keys(DATASET_SEARCH_RETURN_MAPPING).reduce((acc, key) => {
acc[DATASET_SEARCH_RETURN_MAPPING[key]] = ds._source[key];
return acc;
}, {});
const highlight = Object.keys(DATASET_SEARCH_RETURN_MAPPING).reduce((acc, key) => {
acc[DATASET_SEARCH_RETURN_MAPPING[key]] = ds.highlight[`${key}.search`];
return acc;
}, {});

if (!ds.inner_hits) {
return {content: content, highlight: highlight};
}

const terms = Object.keys(ds.inner_hits);
const additionalHitsDict = {};
if (terms.length > 0) {
terms.forEach((t) => {
ds.inner_hits[t].hits.hits.forEach((hit) => {
if (!additionalHitsDict[hit._nested.offset]) { // We currently don't use this code
additionalHitsDict[hit._nested.offset] = {};
additionalHitsDict[hit._nested.offset].source = hit._source;
additionalHitsDict[hit._nested.offset].highlight = [];
}
additionalHitsDict[hit._nested.offset].highlight = additionalHitsDict[hit._nested.offset].highlight.concat(hit.highlight['additional.attr_set.k']);
});
}
const additionalHits = [];
for (let key in additionalHitsDict) {
const tmp = {};
tmp.content = additionalHitsDict[key].source;
tmp.highlight = {};
tmp.highlight['additional.attr_set.k'] = utils.consolidateHighlight(additionalHitsDict[key].highlight);
additionalHits.push(tmp);
}
return {content: ds._source, highlight: ds.highlight, additionalHits: additionalHits};
});
}
const additionalHits = [];
for (let key in additionalHitsDict) { // We currently don't use this code
const tmp = {};
tmp.content = additionalHitsDict[key].source;
tmp.highlight = {};
tmp.highlight['additional.attr_set.k'] = utils.consolidateHighlight(additionalHitsDict[key].highlight);
additionalHits.push(tmp);
}
return {content: ds._source, highlight: ds.highlight};
return {content: content, highlight: highlight, additionalHits: additionalHits};
});
result.total = searchResults.hits.total.value;
result.data = datasets;
Expand Down
29 changes: 27 additions & 2 deletions Utils/datasetFields.js
Original file line number Diff line number Diff line change
@@ -1,10 +1,13 @@
// Default sort field for dataset search
const DATASET_DEFAULT_SORT_FIELD = 'dataset_title_sort';
// Maps Dataset natural field names to property names

// Dataset fields eligible for text search
const DATASET_SEARCH_FIELDS = [
// 'dataset_uuid',
'dataset_source_repo.search',
'dataset_title.search',
'description.search',
// 'description.search',
'description_anchorless.search',
'experimental_approaches.search',
'dataset_source_id.search',
'dataset_source_url.search',
Expand Down Expand Up @@ -32,7 +35,11 @@ const DATASET_SEARCH_FIELDS = [
'related_diseases.search',
'related_terms.search',
];

// Fields to highlight in dataset search results
const DATASET_HIGHLIGHT_FIELDS = DATASET_SEARCH_FIELDS;

// Fields to return in dataset search results
const DATASET_RETURN_FIELDS = [
// 'dataset_uuid',
'dataset_source_repo',
Expand Down Expand Up @@ -65,6 +72,23 @@ const DATASET_RETURN_FIELDS = [
'related_diseases',
'related_terms',
];

// Opensearch properties that need to be mapped to different return fields
const DATASET_SEARCH_RETURN_MAPPING_EXCEPTIONS = {
'description_anchorless': 'description',
};

// Opensearch properties mapped to dataset search return fields
const DATASET_SEARCH_RETURN_MAPPING = {
...DATASET_RETURN_FIELDS.filter(field => !Object.values(DATASET_SEARCH_RETURN_MAPPING_EXCEPTIONS).includes(field)) // Exclude some fields
.reduce((acc, str) => ({ // By default, Opensearch property has same name as return field
...acc,
[str]: str,
}), {}),
...DATASET_SEARCH_RETURN_MAPPING_EXCEPTIONS, // Special fields are mapped here
};

// Map column names to properties for dataset CSV export
const datasetFields = {
'Dataset UUID': 'dataset_uuid',
'Dataset Title': 'dataset_title',
Expand Down Expand Up @@ -98,5 +122,6 @@ module.exports = {
DATASET_SEARCH_FIELDS,
DATASET_HIGHLIGHT_FIELDS,
DATASET_RETURN_FIELDS,
DATASET_SEARCH_RETURN_MAPPING,
datasetFields,
};